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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116765265_116766668_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116765265 - 116766668
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTCTTACTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTGTTCTTACTT
Flanking Amino Acid:
SPHVKYICPHAPVMPVSLNM
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.7
43.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
83.5
0.75
0.7
82
28.7
Minor 5ss
44.8
-0.6
2.8
53.8
43.6
Minor BPS
61.7
0.44
1.6
74.52
43.3

Associated Gene:

Gene:
LYPLA1
Ensembl Gene ID:
ENSAPLG00000004475
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004597
116759692 - 116770232
10541