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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116766735_116769855_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116766735 - 116769855
Intron Length:
3121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGCGTATG
5'SS Class:
major
3'SS Sequence:
TTGTTGTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTGTTGTTAACA
Flanking Amino Acid:
VIFLHGLGDTGHGWSEALAG
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
68.9
43.5
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
77.3
0.62
1
73.3
40.9
Minor 5ss
32.4
-2
3
33.3
41.9
Minor BPS
65.6
0.49
2.1
78.47
38.6

Associated Gene:

Gene:
LYPLA1
Ensembl Gene ID:
ENSAPLG00000004475
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004597
116759692 - 116770232
10541