Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116769888_116770163_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116769888 - 116770163

Intron Length:

276

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGTGCG

5'SS Class:

major

3'SS Sequence:

TTCTCTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCGTCAT

U12 Branch Point Sequence:

AGGGCTCTAACG

Flanking Amino Acid:

VPAARKATAAVIFLHGLGDT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.7

0.32

1.3

57.1

42.2

Major BPS

72.2

0.55

1.2

73.6

41.8

Major PPT

90.9

0.92

0.6

84.1

30.9

Minor 5ss

29.4

-2.4

3.1

37.2

40.3

Minor BPS

47.7

-0.3

1.8

50.94

43.4

Associated Gene:

Gene:

LYPLA1

Ensembl Gene ID:

ENSAPLG00000004475

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004597

116759692 - 116770232

10541