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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116776863_116779291_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116776863 - 116779291
Intron Length:
2429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATAAATA
Flanking Amino Acid:
IPKYGFNEGHSFRRQYQPLS
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.4
0.77
0.7
77.3
31.4
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
58.8
0.27
1.9
73.34
38.5

Associated Gene:

Gene:
MRPL15
Ensembl Gene ID:
ENSAPLG00000004466
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004585
116773414 - 116781700
8287