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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116780091_116781362_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116780091 - 116781362
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCATATCTAATT
Flanking Amino Acid:
TTSFYDPRSLEILIKPVLFF
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
82.5
37
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
70.8
0.47
0.9
64.8
35.5
Minor 5ss
37.8
-1.4
3.4
49.4
46.6
Minor BPS
51
0.11
1.8
70.27
40.9

Associated Gene:

Gene:
MRPL15
Ensembl Gene ID:
ENSAPLG00000004466
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004585
116773414 - 116781700
8287