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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116798097_116798999_F

Intron Information:

Intron Rank:
126635
Intron Class:
major
Intron Phase:
Intron Coordinates:
116798097 - 116798999
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
87.9
0.85
0.7
80.8
31.3
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
71.3
0.75
1.9
93.77
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018260
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026241
116795033 - 116801179
6147
ENSAPLT00000027948
116797931 - 116799888
1958