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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116821794_116831414_F

Intron Information:

Intron Rank:
151028
Intron Class:
major
Intron Phase:
Intron Coordinates:
116821794 - 116831414
Intron Length:
9621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACAAAA
U12 Branch Point Sequence:
TTTGCCACAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.8
38.3
Major BPS
49.2
-0
0.9
54.9
27
Major PPT
78.9
0.65
0.8
73
31.3
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
49.6
-0
2
70.28
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031148
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041361
116821407 - 116835426
14020