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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116822775_116831414_F

Intron Information:

Intron Rank:
151026
Intron Class:
major
Intron Phase:
Intron Coordinates:
116822775 - 116831414
Intron Length:
8640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACAAAA
U12 Branch Point Sequence:
TTTGCCACAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
49.2
-0
0.9
54.9
27
Major PPT
78.9
0.65
0.8
73
31.3
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
49.6
-0
2
70.28
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031148
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028503
116821407 - 116835426
14020