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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116863922_116873754_F

Intron Information:

Intron Rank:
149763
Intron Class:
major
Intron Phase:
Intron Coordinates:
116863922 - 116873754
Intron Length:
9833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCATCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.4
0.75
0.7
77.1
31.6
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
55.8
0.26
1.7
68.89
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034871
116863459 - 116877226
13768