Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116872576_116873754_F

Intron Information:

Intron Rank:

149758

Intron Class:

major

Intron Phase:

Intron Coordinates:

116872576 - 116873754

Intron Length:

1179

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTAAC

5'SS Class:

major

3'SS Sequence:

TTCCTTTCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

GCATCTTTCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

74.7

35.4

Major BPS

87.6

0.93

0.9

89.3

Major PPT

83.4

0.75

0.7

77.1

31.6

Minor 5ss

38.9

-1.2

2.8

55.7

41.6

Minor BPS

55.8

0.26

1.7

68.89

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030576

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024275

116872141 - 116877392

5252