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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116873896_116877198_F

Intron Information:

Intron Rank:
149759
Intron Class:
major
Intron Phase:
Intron Coordinates:
116873896 - 116877198
Intron Length:
3303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTTCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTCCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
81.2
33.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.6
0.78
0.7
79.5
26
Minor 5ss
49
-0.1
2.8
77.2
37.5
Minor BPS
75.6
0.8
1.7
83.03
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033639
116869814 - 116877392
7579
ENSAPLT00000024275
116872141 - 116877392
5252
ENSAPLT00000034871
116863459 - 116877226
13768