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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117139537_117140067_F

Intron Information:

Intron Rank:
126396
Intron Class:
major
Intron Phase:
Intron Coordinates:
117139537 - 117140067
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAAATAA
5'SS Class:
major
3'SS Sequence:
TGTTGCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATTTTTGGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
69.3
30.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.8
0.54
0.9
65.9
40.9
Minor 5ss
39
-1.2
3.2
51.2
45.7
Minor BPS
61
0.34
1.4
71.21
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029684
117139053 - 117144655
5603