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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117147081_117147352_F

Intron Information:

Intron Rank:
146208
Intron Class:
major
Intron Phase:
Intron Coordinates:
117147081 - 117147352
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
GATTACTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
71.4
0.53
1
67
39.8
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
59.8
0.3
1.8
70.72
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028773
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018630
117146956 - 117149900
2945