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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117307371_117390420_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117307371 - 117390420
Intron Length:
83050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TATGCCTTAACT
Flanking Amino Acid:
VQTRTLQALQGLTAAASLVS
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
77.1
35.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
77.5
0.62
0.8
70.3
36.4
Minor 5ss
33.8
-1.8
4
54.5
49.7
Minor BPS
84.3
1.16
1.2
93.36
34.7

Associated Gene:

Gene:
XKR4
Ensembl Gene ID:
ENSAPLG00000001207
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001193
117163050 - 117391367
228318