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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117406877_117411309_R

Intron Information:

Intron Rank:
138260
Intron Class:
major
Intron Phase:
Intron Coordinates:
117406877 - 117411309
Intron Length:
4433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAATACA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.3
74
36.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
30.8
-2.2
2.5
35.4
40.5
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021925
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046059
117404987 - 117411822
6836