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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117426260_117428290_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117426260 - 117428290
Intron Length:
2031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTGAAT
Flanking Amino Acid:
FAQVAIDAKVPIIPVFTQNV
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
100
1.24
0.5
100
0
Major PPT
80.9
0.7
0.7
74.1
31
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
69.9
0.71
1.7
90.05
33.3

Associated Gene:

Gene:
TMEM68
Ensembl Gene ID:
ENSAPLG00000011638
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024162
117412167 - 117436601
24435
ENSAPLT00000012117
117421304 - 117436601
15298