Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117428485_117433623_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117428485 - 117433623

Intron Length:

5139

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGTGC

5'SS Class:

major

3'SS Sequence:

TCTTACTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

GTTTTCTGAATT

Flanking Amino Acid:

VADHFVSRIPGFKLIIEAFE

Intron Amino Acid Position:

195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.59

1.2

64.8

42.3

Major BPS

0.82

0.8

24.9

Major PPT

86.3

0.82

0.8

80.7

30.9

Minor 5ss

42.6

-0.8

3.2

59.3

45.5

Minor BPS

72.5

0.78

1.3

85.39

34.6

Associated Gene:

Gene:

TMEM68

Ensembl Gene ID:

ENSAPLG00000011638

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024162

117412167 - 117436601

24435

ENSAPLT00000012117

117421304 - 117436601

15298