Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117445776_117447582_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117445776 - 117447582

Intron Length:

1807

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTAAA

U12 Branch Point Sequence:

AGGTATGTAAAA

Flanking Amino Acid:

NITTDELVEKTKSAVQALIK

Intron Amino Acid Position:

302

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.04

0.8

78.8

38.3

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

86.1

0.81

0.7

83.7

24.4

Minor 5ss

39.6

-1.2

2.8

49.7

46.6

Minor BPS

43.3

-0.5

2.1

52.61

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023626

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036620

117444180 - 117459157

14978