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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117448180_117455791_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117448180 - 117455791
Intron Length:
7612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CATGATTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATGATT
Flanking Amino Acid:
FAQVALDAKVPIIPMYTQNV
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
100
1.24
0.5
100
0
Major PPT
64.5
0.33
0.9
57.7
38
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
68.1
0.65
1.5
87.5
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023626
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036620
117444180 - 117459157
14978