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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117455986_117457248_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117455986 - 117457248
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTTCTTACAT
Flanking Amino Acid:
VADHFVFRLPGLKLLLEVTG
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74.4
36
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.3
0.82
0.8
81.2
34.9
Minor 5ss
33.3
-1.9
2.8
33.8
41.1
Minor BPS
63.3
0.5
1.7
80.5
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023626
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036620
117444180 - 117459157
14978