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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117477170_117477813_R

Intron Information:

Intron Rank:
155335
Intron Class:
major
Intron Phase:
Intron Coordinates:
117477170 - 117477813
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTACTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
66.3
0.59
1.7
85.39
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025237
117477123 - 117482174
5052