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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117477913_117481441_R

Intron Information:

Intron Rank:
155336
Intron Class:
major
Intron Phase:
Intron Coordinates:
117477913 - 117481441
Intron Length:
3529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTATA
5'SS Class:
major
3'SS Sequence:
ATTTACTGTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGTCATTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
80.8
33.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
64.4
0.32
1.2
64.8
40.7
Minor 5ss
39.6
-1.2
3.1
50.6
40.3
Minor BPS
60.7
0.42
1.9
79.82
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025237
117477123 - 117482174
5052