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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11748258_11758450_R

Intron Information:

Intron Rank:
142189
Intron Class:
major
Intron Phase:
Intron Coordinates:
11748258 - 11758450
Intron Length:
10193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAGAA
5'SS Class:
major
3'SS Sequence:
TGTAACTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CCTTTTGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.3
71.3
34.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78
0.63
0.9
73.7
41.3
Minor 5ss
25.2
-2.9
3
29.7
43.1
Minor BPS
55.9
0.26
2
74.22
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042412
11743191 - 11758488
15298