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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117506125_117506600_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
117506125 - 117506600
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCCTCTTTATTT
Flanking Amino Acid:
IVCLCSRAFVEDRKLYKLGL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
62.1
38.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.2
0.86
0.7
84.3
30.6
Minor 5ss
27.9
-2.5
3
27.6
37.5
Minor BPS
63.1
0.49
1.6
74.81
43.2

Associated Gene:

Gene:
TGS1
Ensembl Gene ID:
ENSAPLG00000006073
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006307
117506027 - 117532361
26335
ENSAPLT00000022140
117506027 - 117524029
18003