Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117521049_117523298_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117521049 - 117523298

Intron Length:

2250

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTTAC

5'SS Class:

strong_major

3'SS Sequence:

TTTGCATATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

GTGTCCTTAAAA

Flanking Amino Acid:

FLPRNADINQAHTSDFQVSH

Intron Amino Acid Position:

851

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

78.4

32.4

Major BPS

0.62

1.4

85.7

34.9

Major PPT

76.3

0.59

39.7

Minor 5ss

39.1

-1.2

3.1

51.5

45.7

Minor BPS

75.3

0.79

1.4

77.78

38.6

Associated Gene:

Gene:

TGS1

Ensembl Gene ID:

ENSAPLG00000006073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022140

117506027 - 117524029

18003