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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117521049_117532073_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117521049 - 117532073
Intron Length:
11025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
TGTGCATCGATT
Flanking Amino Acid:
FLPRNADINQIASLAGPGGK
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.4
32.4
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
47.8
-0
1.9
69.33
41.7

Associated Gene:

Gene:
TGS1
Ensembl Gene ID:
ENSAPLG00000006073
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006307
117506027 - 117532361
26335