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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117584160_117585295_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117584160 - 117585295
Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TATTTCATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AACTGCTTAATT
Flanking Amino Acid:
DPTSNKQQRPAHTEAHLLPG
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80
0.68
0.8
75.1
34.1
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
63.7
0.51
1.8
75.28
41.8

Associated Gene:

Gene:
LYN
Ensembl Gene ID:
ENSAPLG00000006127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006407
117583962 - 117614717
30756