About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117585543_117585893_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
117585543 - 117585893
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
TTTCCTTTGAGT
Flanking Amino Acid:
KKGEKLKVIEELGEWWKAKS
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
81.2
0.7
0.9
73.5
41.9
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
66.9
0.61
1.6
84.49
36.3

Associated Gene:

Gene:
LYN
Ensembl Gene ID:
ENSAPLG00000006127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006407
117583962 - 117614717
30756