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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117585993_117586097_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
117585993 - 117586097
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
ACATACTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AACTCTTTGACA
Flanking Amino Acid:
VAKVNTLETEEWFFKDITRK
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.2
35.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.5
0.51
1
62.3
43.3
Minor 5ss
44.1
-0.6
2.8
56.3
41.9
Minor BPS
68.8
0.58
1.2
69.18
37

Associated Gene:

Gene:
LYN
Ensembl Gene ID:
ENSAPLG00000006127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006407
117583962 - 117614717
30756