About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117589379_117596145_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117589379 - 117596145
Intron Length:
6767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
GTGCACTGAACG
Flanking Amino Acid:
GAGQFGEVWMGYYHNSTKVA
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
84.1
30.2
Major BPS
62
0.3
1
53
34.1
Major PPT
82.7
0.74
0.7
81.3
23.8
Minor 5ss
43.3
-0.7
2.8
49.9
46.4
Minor BPS
49.6
-0.1
1.8
56.19
44.2

Associated Gene:

Gene:
LYN
Ensembl Gene ID:
ENSAPLG00000006127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006407
117583962 - 117614717
30756