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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117605967_117608062_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117605967 - 117608062
Intron Length:
2096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTGCCTATGACT
Flanking Amino Acid:
IEDNEYTAREGAKFPIKWTA
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.8
0.83
0.7
85.5
29.2
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
58.7
0.36
1.6
77.6
38.9

Associated Gene:

Gene:
LYN
Ensembl Gene ID:
ENSAPLG00000006127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006407
117583962 - 117614717
30756