About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117608195_117613100_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117608195 - 117613100
Intron Length:
4906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGACA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTATTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTATTATTAAAG
Flanking Amino Acid:
IVTYGKIPYPGMSNSDVMVA
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74
36.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
69.1
0.43
1.1
68.6
40.6
Minor 5ss
38.6
-1.3
3
49.3
46.7
Minor BPS
58.8
0.14
1.8
66.72
40.4

Associated Gene:

Gene:
LYN
Ensembl Gene ID:
ENSAPLG00000006127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006407
117583962 - 117614717
30756