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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117617015_117618239_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117617015 - 117618239
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGACAG
5'SS Class:
major
3'SS Sequence:
TGTATGCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATGCACCTAACA
Flanking Amino Acid:
SRLKHTIMLKDQEMNNLQNW
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.2
56.3
42.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
68.2
0.41
0.9
61.5
40
Minor 5ss
33.8
-1.9
2.8
39.1
46.1
Minor BPS
51
0.03
1.9
65.59
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007004
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007268
117616742 - 117640285
23544