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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117618360_117619995_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117618360 - 117619995
Intron Length:
1636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCTCTT
5'SS Class:
major
3'SS Sequence:
GTTTTATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGGTGTTGAACT
Flanking Amino Acid:
LQKQCTEKDELIKSLKLKIQ
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
72.7
44.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.9
0.85
0.8
85.4
34.1
Minor 5ss
44.3
-0.6
3.3
67.2
43.9
Minor BPS
54.4
0.22
1.9
73.33
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007004
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007268
117616742 - 117640285
23544