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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117620064_117620142_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117620064 - 117620142
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGAACC
5'SS Class:
major
3'SS Sequence:
TTTTTGTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTGTGTATAAAA
Flanking Amino Acid:
ILTTENGTELDLANKMMKRA
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
63.8
40.9
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
85.3
0.79
0.7
80.9
31.3
Minor 5ss
33.8
-1.8
3.2
45.3
42.6
Minor BPS
48
-0.1
2.1
65.21
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007004
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007268
117616742 - 117640285
23544