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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117624515_117625816_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117624515 - 117625816
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGGATTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TTGTGTTCAACT
Flanking Amino Acid:
VMKFSAIAKQVIQTILPKSL
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
76.5
0.6
1
72.8
41.9
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
58.6
0.35
2
79.76
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007004
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007268
117616742 - 117640285
23544