About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117626758_117628678_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
117626758 - 117628678
Intron Length:
1921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTCTTGCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTCTGGATAATT
Flanking Amino Acid:
EHQPHVLGVSELSFCDLAGS
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
73.9
32.9
Major BPS
70
0.5
1
67
39.8
Major PPT
78.7
0.65
0.9
73.7
36
Minor 5ss
40.8
-1
2.8
45.6
43.6
Minor BPS
45.5
-0.2
2.6
72.18
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007004
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007268
117616742 - 117640285
23544