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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117628751_117630394_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
117628751 - 117630394
Intron Length:
1644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTCC
5'SS Class:
major
3'SS Sequence:
CTTTCCATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
AGTTACTAAAAA
Flanking Amino Acid:
CTRMNEQSSRSHSIFSIRLL
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
69.6
35.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82.8
0.74
0.8
74.1
35.2
Minor 5ss
43.9
-0.7
2.3
54.4
42.7
Minor BPS
50.4
0.01
1.9
65.26
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007004
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007268
117616742 - 117640285
23544