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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117630783_117631280_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117630783 - 117631280
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
TTTTGGCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
GACCACTAAACT
Flanking Amino Acid:
TSKNQPSDPLEKNFVPLDTH
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
72.5
0.51
1
67.4
39.1
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
48.9
-0
1.9
64.69
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007004
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007268
117616742 - 117640285
23544