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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117635287_117636137_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117635287 - 117636137
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATTTTTTCCATT
Flanking Amino Acid:
QSVHRFTFSHVFGPETTQSE
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
74.4
36.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
65.1
0.34
1
63.4
31.8
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
49.4
0.04
1.9
73.56
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007004
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007268
117616742 - 117640285
23544