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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117639039_117640153_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117639039 - 117640153
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGGGTT
5'SS Class:
major
3'SS Sequence:
TTTTTATGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGAATA
Flanking Amino Acid:
TVLCNPEEQEAYQPLKVFLR
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
74.7
35.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.8
0.51
1
70.8
38.9
Minor 5ss
35.8
-1.6
3.7
54.5
49.7
Minor BPS
62.5
0.39
1.7
77.18
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007004
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007268
117616742 - 117640285
23544