Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117675389_117675493_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117675389 - 117675493

Intron Length:

105

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGCGTG

5'SS Class:

major

3'SS Sequence:

TACTCTCACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

TCACTCATACTC

Flanking Amino Acid:

RDTQKVPSGKRERPYKCTQQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.3

67.1

44.6

Major BPS

73.8

0.59

0.9

26.8

Major PPT

70.9

0.47

0.9

65.3

34.9

Minor 5ss

41.3

-1

3.4

54.7

43.2

Minor BPS

-0.4

1.8

52.87

38.8

Associated Gene:

Gene:

PLAG1

Ensembl Gene ID:

ENSAPLG00000007090

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045173

117673481 - 117675677

2197