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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117675678_117679045_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
117675678 - 117679045
Intron Length:
3368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
79.6
35.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
46
-0.4
2.8
65.5
45.8
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
PLAG1
Ensembl Gene ID:
ENSAPLG00000007090
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007352
117673481 - 117718708
45228