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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117748720_117749245_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
117748720 - 117749245
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCTAC
U12 Branch Point Sequence:
TCTGCCTTACAG
Flanking Amino Acid:
RSLYVFFALKNIMPVKISVL
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
48.6
-0
1.2
47.8
37.3
Major PPT
79.3
0.66
0.8
72
32.7
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
52.1
-0
1.9
60.06
47.5

Associated Gene:

Gene:
SDR16C5
Ensembl Gene ID:
ENSAPLG00000007237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007518
117748582 - 117757279
8698