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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117749372_117749632_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
117749372 - 117749632
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTGTTATAAGA
Flanking Amino Acid:
NTGMFDGAQTKWSRVLPVLE
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
76.8
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.6
0.82
0.7
84.2
23.8
Minor 5ss
31.3
-2.1
2.7
33.6
35.4
Minor BPS
49
-0
2
67.02
40

Associated Gene:

Gene:
SDR16C5
Ensembl Gene ID:
ENSAPLG00000007237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007518
117748582 - 117757279
8698