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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117749778_117750821_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117749778 - 117750821
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTAT
5'SS Class:
major
3'SS Sequence:
TTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
AGLIGVNRLADYCASKFAAV
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
68.5
38.9
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
37.1
-1.5
3.6
55.1
49.2
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
SDR16C5
Ensembl Gene ID:
ENSAPLG00000007237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007518
117748582 - 117757279
8698