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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117750922_117751933_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117750922 - 117751933
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
ACTTACGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCATTGGAACT
Flanking Amino Acid:
MQVNTMAHFWTCKAFLPAMI
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
60.6
44.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.4
0.53
1
65.8
40
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
46.6
-0.1
2.1
68.53
42.7

Associated Gene:

Gene:
SDR16C5
Ensembl Gene ID:
ENSAPLG00000007237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007518
117748582 - 117757279
8698