About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117752066_117756935_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117752066 - 117756935
Intron Length:
4870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTTGCGTAATA
Flanking Amino Acid:
RQEVYRVADQVKKEVGDVSI
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
80
0.75
1
78.6
31
Major PPT
82.9
0.74
0.7
81.2
30.9
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
51.8
0.05
2.4
71.68
41

Associated Gene:

Gene:
SDR16C5
Ensembl Gene ID:
ENSAPLG00000007237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007518
117748582 - 117757279
8698