Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117819552_117822082_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117819552 - 117822082

Intron Length:

2531

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGCGC

5'SS Class:

major

3'SS Sequence:

ATCCATTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTCAT

U12 Branch Point Sequence:

TTCTCAGCAAAC

Flanking Amino Acid:

LGPRADIHPLACTLECEGKL

Intron Amino Acid Position:

255

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

60.5

44.3

Major BPS

68.2

0.45

1.1

69.4

37.7

Major PPT

80.1

0.68

0.9

76.9

36.3

Minor 5ss

31.2

-2.1

3.3

38.8

40.9

Minor BPS

43.4

-0.5

2.4

61.17

43.7

Associated Gene:

Gene:

PENK

Ensembl Gene ID:

ENSAPLG00000007565

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007844

117818581 - 117823638

5058