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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117855468_117856332_R

Intron Information:

Intron Rank:
128916
Intron Class:
major
Intron Phase:
Intron Coordinates:
117855468 - 117856332
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
ACTGTCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
75.7
0.58
0.9
69.9
35.9
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
51.4
0.02
1.8
66.47
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016497
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047893
117855309 - 117858636
3328